Elucidation of the unexplored biodiversity of ant venom peptidomes via MALDI-TOF mass spectrometry and its application for chemotaxonomy.
Identifieur interne : 003992 ( Main/Exploration ); précédent : 003991; suivant : 003993Elucidation of the unexplored biodiversity of ant venom peptidomes via MALDI-TOF mass spectrometry and its application for chemotaxonomy.
Auteurs : Axel Touchard [France] ; Mélodie Dauvois [France] ; Marie-Jeanne Arguel [France] ; Frédéric Petitclerc [France] ; Mathieu Leblanc [France] ; Alain Dejean [France] ; Jérôme Orivel [France] ; Graham M. Nicholson [Australie] ; Pierre Escoubas [France]Source :
- Journal of proteomics [ 1876-7737 ] ; 2014.
Descripteurs français
- KwdFr :
- Animaux, Cartographie peptidique (), Fourmis (), Fourmis (génétique), Fourmis (métabolisme), Peptides (), Peptides (génétique), Peptides (métabolisme), Phylogénie, Protéines d'insecte (), Protéines d'insecte (génétique), Protéines d'insecte (métabolisme), Spectrométrie de masse MALDI (), Venins de fourmi (), Venins de fourmi (génétique), Venins de fourmi (métabolisme).
- MESH :
- génétique : Fourmis, Peptides, Protéines d'insecte, Venins de fourmi.
- métabolisme : Fourmis, Peptides, Protéines d'insecte, Venins de fourmi.
- Animaux, Cartographie peptidique, Fourmis, Peptides, Phylogénie, Protéines d'insecte, Spectrométrie de masse MALDI, Venins de fourmi.
English descriptors
- KwdEn :
- Animals, Ant Venoms (chemistry), Ant Venoms (genetics), Ant Venoms (metabolism), Ants (chemistry), Ants (classification), Ants (genetics), Ants (metabolism), Insect Proteins (chemistry), Insect Proteins (genetics), Insect Proteins (metabolism), Peptide Mapping (methods), Peptides (chemistry), Peptides (genetics), Peptides (metabolism), Phylogeny, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization (methods).
- MESH :
- chemical , chemistry : Ant Venoms, Insect Proteins, Peptides.
- chemical , genetics : Ant Venoms, Insect Proteins, Peptides.
- chemical , metabolism : Ant Venoms, Insect Proteins, Peptides.
- chemistry : Ants.
- classification : Ants.
- genetics : Ants.
- metabolism : Ants.
- methods : Peptide Mapping, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization.
- Animals, Phylogeny.
Abstract
The rise of integrative taxonomy, a multi-criteria approach used in characterizing species, fosters the development of new tools facilitating species delimitation. Mass spectrometric (MS) analysis of venom peptides from venomous animals has previously been demonstrated to be a valid method for identifying species. Here we aimed to develop a rapid chemotaxonomic tool for identifying ants based on venom peptide mass fingerprinting. The study focused on the biodiversity of ponerine ants (Hymenoptera: Formicidae: Ponerinae) in French Guiana. Initial experiments optimized the use of automated matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) to determine variations in the mass profiles of ant venoms using several MALDI matrices and additives. Data were then analyzed via a hierarchical cluster analysis to classify the venoms of 17 ant species. In addition, phylogenetic relationships were assessed and were highly correlated with methods using DNA sequencing of the mitochondrial gene cytochrome c oxidase subunit 1. By combining a molecular genetics approach with this chemotaxonomic approach, we were able to improve the accuracy of the taxonomic findings to reveal cryptic ant species within species complexes. This chemotaxonomic tool can therefore contribute to more rapid species identification and more accurate taxonomies.
DOI: 10.1016/j.jprot.2014.01.009
PubMed: 24456813
Affiliations:
- Australie, France
- Guyane, Midi-Pyrénées, Occitanie (région administrative), Provence-Alpes-Côte d'Azur
- Kourou, Toulouse
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Le document en format XML
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Electronic address: axel.touchard@ecofog.gf.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CNRS, UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, BP 316, 97379 Kourou Cedex</wicri:regionArea><placeName><region type="region" nuts="2">Guyane</region><settlement type="city">Kourou</settlement></placeName></affiliation></author><author><name sortKey="Dauvois, Melodie" sort="Dauvois, Melodie" uniqKey="Dauvois M" first="Mélodie" last="Dauvois">Mélodie Dauvois</name><affiliation wicri:level="3"><nlm:affiliation>VenomeTech, 473 Route des Dolines - Villa 3, Valbonne 06560, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>VenomeTech, 473 Route des Dolines - Villa 3, Valbonne 06560</wicri:regionArea><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region></placeName></affiliation></author><author><name sortKey="Arguel, Marie Jeanne" sort="Arguel, Marie Jeanne" uniqKey="Arguel M" first="Marie-Jeanne" last="Arguel">Marie-Jeanne Arguel</name><affiliation wicri:level="3"><nlm:affiliation>VenomeTech, 473 Route des Dolines - Villa 3, Valbonne 06560, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>VenomeTech, 473 Route des Dolines - Villa 3, Valbonne 06560</wicri:regionArea><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region></placeName></affiliation></author><author><name sortKey="Petitclerc, Frederic" sort="Petitclerc, Frederic" uniqKey="Petitclerc F" first="Frédéric" last="Petitclerc">Frédéric Petitclerc</name><affiliation wicri:level="3"><nlm:affiliation>CNRS, UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, BP 316, 97379 Kourou Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CNRS, UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, BP 316, 97379 Kourou Cedex</wicri:regionArea><placeName><region type="region" nuts="2">Guyane</region><settlement type="city">Kourou</settlement></placeName></affiliation></author><author><name sortKey="Leblanc, Mathieu" sort="Leblanc, Mathieu" uniqKey="Leblanc M" first="Mathieu" last="Leblanc">Mathieu Leblanc</name><affiliation wicri:level="3"><nlm:affiliation>VenomeTech, 473 Route des Dolines - Villa 3, Valbonne 06560, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>VenomeTech, 473 Route des Dolines - Villa 3, Valbonne 06560</wicri:regionArea><placeName><region type="region" nuts="2">Provence-Alpes-Côte d'Azur</region></placeName></affiliation></author><author><name sortKey="Dejean, Alain" sort="Dejean, Alain" uniqKey="Dejean A" first="Alain" last="Dejean">Alain Dejean</name><affiliation wicri:level="3"><nlm:affiliation>CNRS, UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, BP 316, 97379 Kourou Cedex, France; Université de Toulouse, UPS, INP, Laboratoire Écologie Fonctionnelle et Environnement (ECOLAB), 118 route de Narbonne, 31062 Toulouse, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CNRS, UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, BP 316, 97379 Kourou Cedex, France; Université de Toulouse, UPS, INP, Laboratoire Écologie Fonctionnelle et Environnement (ECOLAB), 118 route de Narbonne, 31062 Toulouse</wicri:regionArea><placeName><region type="region" nuts="2">Occitanie (région administrative)</region><region type="old region" nuts="2">Midi-Pyrénées</region><settlement type="city">Toulouse</settlement></placeName></affiliation></author><author><name sortKey="Orivel, Jerome" sort="Orivel, Jerome" uniqKey="Orivel J" first="Jérôme" last="Orivel">Jérôme Orivel</name><affiliation wicri:level="3"><nlm:affiliation>CNRS, UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, BP 316, 97379 Kourou Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>CNRS, UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, BP 316, 97379 Kourou Cedex</wicri:regionArea><placeName><region type="region" nuts="2">Guyane</region><settlement type="city">Kourou</settlement></placeName></affiliation></author><author><name sortKey="Nicholson, Graham M" sort="Nicholson, Graham M" uniqKey="Nicholson G" first="Graham M" last="Nicholson">Graham M. Nicholson</name><affiliation wicri:level="1"><nlm:affiliation>Neurotoxin Research Group, School of Medical & Molecular Biosciences, University of Technology, Sydney, NSW, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Neurotoxin Research Group, School of Medical & Molecular Biosciences, University of Technology, Sydney, NSW</wicri:regionArea><wicri:noRegion>NSW</wicri:noRegion></affiliation></author><author><name sortKey="Escoubas, Pierre" sort="Escoubas, Pierre" uniqKey="Escoubas P" first="Pierre" last="Escoubas">Pierre Escoubas</name><affiliation wicri:level="1"><nlm:affiliation>VenomeTech, 473 Route des Dolines - Villa 3, Valbonne 06560, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>VenomeTech, 473 Route des Dolines - Villa 3, Valbonne 06560</wicri:regionArea><wicri:noRegion>06560</wicri:noRegion><wicri:noRegion>06560</wicri:noRegion></affiliation></author></analytic><series><title level="j">Journal of proteomics</title><idno type="eISSN">1876-7737</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Ant Venoms (chemistry)</term><term>Ant Venoms (genetics)</term><term>Ant Venoms (metabolism)</term><term>Ants (chemistry)</term><term>Ants (classification)</term><term>Ants (genetics)</term><term>Ants (metabolism)</term><term>Insect Proteins (chemistry)</term><term>Insect Proteins (genetics)</term><term>Insect Proteins (metabolism)</term><term>Peptide Mapping (methods)</term><term>Peptides (chemistry)</term><term>Peptides (genetics)</term><term>Peptides (metabolism)</term><term>Phylogeny</term><term>Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization (methods)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Cartographie peptidique ()</term><term>Fourmis ()</term><term>Fourmis (génétique)</term><term>Fourmis (métabolisme)</term><term>Peptides ()</term><term>Peptides (génétique)</term><term>Peptides (métabolisme)</term><term>Phylogénie</term><term>Protéines d'insecte ()</term><term>Protéines d'insecte (génétique)</term><term>Protéines d'insecte (métabolisme)</term><term>Spectrométrie de masse MALDI ()</term><term>Venins de fourmi ()</term><term>Venins de fourmi (génétique)</term><term>Venins de fourmi (métabolisme)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Ant Venoms</term><term>Insect Proteins</term><term>Peptides</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Ant Venoms</term><term>Insect Proteins</term><term>Peptides</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Ant Venoms</term><term>Insect Proteins</term><term>Peptides</term></keywords><keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Ants</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Ants</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Ants</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Fourmis</term><term>Peptides</term><term>Protéines d'insecte</term><term>Venins de fourmi</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Ants</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Peptide Mapping</term><term>Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Fourmis</term><term>Peptides</term><term>Protéines d'insecte</term><term>Venins de fourmi</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Phylogeny</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Cartographie peptidique</term><term>Fourmis</term><term>Peptides</term><term>Phylogénie</term><term>Protéines d'insecte</term><term>Spectrométrie de masse MALDI</term><term>Venins de fourmi</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The rise of integrative taxonomy, a multi-criteria approach used in characterizing species, fosters the development of new tools facilitating species delimitation. Mass spectrometric (MS) analysis of venom peptides from venomous animals has previously been demonstrated to be a valid method for identifying species. Here we aimed to develop a rapid chemotaxonomic tool for identifying ants based on venom peptide mass fingerprinting. The study focused on the biodiversity of ponerine ants (Hymenoptera: Formicidae: Ponerinae) in French Guiana. Initial experiments optimized the use of automated matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) to determine variations in the mass profiles of ant venoms using several MALDI matrices and additives. Data were then analyzed via a hierarchical cluster analysis to classify the venoms of 17 ant species. In addition, phylogenetic relationships were assessed and were highly correlated with methods using DNA sequencing of the mitochondrial gene cytochrome c oxidase subunit 1. By combining a molecular genetics approach with this chemotaxonomic approach, we were able to improve the accuracy of the taxonomic findings to reveal cryptic ant species within species complexes. This chemotaxonomic tool can therefore contribute to more rapid species identification and more accurate taxonomies.</div></front></TEI><affiliations><list><country><li>Australie</li><li>France</li></country><region><li>Guyane</li><li>Midi-Pyrénées</li><li>Occitanie (région administrative)</li><li>Provence-Alpes-Côte d'Azur</li></region><settlement><li>Kourou</li><li>Toulouse</li></settlement></list><tree><country name="France"><region name="Guyane"><name sortKey="Touchard, Axel" sort="Touchard, Axel" uniqKey="Touchard A" first="Axel" last="Touchard">Axel Touchard</name></region><name sortKey="Arguel, Marie Jeanne" sort="Arguel, Marie Jeanne" uniqKey="Arguel M" first="Marie-Jeanne" last="Arguel">Marie-Jeanne Arguel</name><name sortKey="Dauvois, Melodie" sort="Dauvois, Melodie" uniqKey="Dauvois M" first="Mélodie" last="Dauvois">Mélodie Dauvois</name><name sortKey="Dejean, Alain" sort="Dejean, Alain" uniqKey="Dejean A" first="Alain" last="Dejean">Alain Dejean</name><name sortKey="Escoubas, Pierre" sort="Escoubas, Pierre" uniqKey="Escoubas P" first="Pierre" last="Escoubas">Pierre Escoubas</name><name sortKey="Leblanc, Mathieu" sort="Leblanc, Mathieu" uniqKey="Leblanc M" first="Mathieu" last="Leblanc">Mathieu Leblanc</name><name sortKey="Orivel, Jerome" sort="Orivel, Jerome" uniqKey="Orivel J" first="Jérôme" last="Orivel">Jérôme Orivel</name><name sortKey="Petitclerc, Frederic" sort="Petitclerc, Frederic" uniqKey="Petitclerc F" first="Frédéric" last="Petitclerc">Frédéric Petitclerc</name></country><country name="Australie"><noRegion><name sortKey="Nicholson, Graham M" sort="Nicholson, Graham M" uniqKey="Nicholson G" first="Graham M" last="Nicholson">Graham M. 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